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gtgagctatctgttaaggttaagttgtgagtggtttggttttggacgaaattcaaccacatttatatcagaagtttcattaaatttctcattatggctatcctagttatatcctgttcctgtttgatttaagtcaaaaagttgaaggtccaatatgctttatcaatttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG
species | Physcomitrella patens |
transcript | PP1S58_254V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GACTAATGTGGTCGCTTTGACTCAG GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGEST: gi|162165760|gb|FC341214.1|FC341214
genomic: GACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
EST: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAG GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGEST: gi|162183241|gb|FC360391.1|FC360391
genomic: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
EST: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAG GTTGTTTCACCAGATGAGTTGAAGGATGACEST: gi|67696982|gb|BJ957215.1|BJ957215
genomic: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGAC
EST: TGAAACACCGACTAATGTGGTCGCTTTGACTCAG GTTGNTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTEST: gi|162184034|gb|FC359404.1|FC359404
genomic: TGAAACACCGACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTG-TTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATT
EST: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAG GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGEST: gi|162244000|gb|FC422329.1|FC422329
genomic: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
EST: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAG GTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGEST: gi|162184033|gb|FC359403.1|FC359403
genomic: GAGGGATGTCCCCAGTTGAAACACCGACTAATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
EST: AATGTGGTCGCTTTGACTCAG GGTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
genomic: AATGTGGTCGCTTTGACTCAGgtgagctatc ... ttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTG
tttgatttaagtcaaaaagttgaaggtccaatatgctttatcaatttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG
gtttgat putative branch site (score: 18)
tttatcaatttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctatctgttaaggttaagttgtgagtggtttggttttggacgaaattcaaccacatttatatcagaagtttcattaaatttctcattatggctatcctagttatatcctgttcctgtttgatttaagtcaaaaagttgaaggtccaatatgctttatcaatttatgtacagGTTGTTTCACCAGATGAGTTGAAGGATGACGAAGAGTATCAAGATATATTGGAAGACATGAAGGAAGAATGTGGGAAGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA