1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttgttaattcttgctctccaagttactgtttttctgcagtcaatgtattgtgaatattaatcgacatctgtgaaatgatttcctgaagcttgtaaactgggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAGAGATTCCTGACCTGATTGGCGAATCGTGGTACTTTGTCAGAGTTCACG
species | Physcomitrella patens |
transcript | PP1S53_215V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAEST: gi|162215717|gb|FC391731.1|FC391731
genomic: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
EST: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAEST: gi|162168196|gb|FC344926.1|FC344926
genomic: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
EST: CGAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAEST: gi|162174225|gb|FC350608.1|FC350608
genomic: CGAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
EST: GAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAEST: gi|162191852|gb|FC368001.1|FC368001
genomic: GAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
EST: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAEST: gi|37852575|gb|BJ610583.1|BJ610583
genomic: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
EST: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAG ATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
genomic: TTCACGCCATCAAGGAAATTTACCACGAGTATAAATCCCGTCAAATTCAGgttgttaatt ... ggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCA
tattaatcgacatctgtgaaatgatttcctgaagcttgtaaactgggctgtacagATGGCGCTTTGTAACCCAAGTCCCAGAGTAATGGAAACCCTAGCCAAGGCAGAGATTCCTGACCTGATTGGCGAATCGTGGTACTTTGTCAGAGTTCACG
tattaat putative branch site (score: 3)
aaatgattt TA-rich tract