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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttaactgcgcgtgccatgatggaatgtcacgacggcagtctacatgtcacatattttttgatattttgttaatctagtgtgtttttcggactattcagGATGCAGCCGCCTGGCTGGAGTACTTTGATTCTAAAGCTCTGGAGCAACAGGAAGTTGCTCGGATGGGAACGCCAAAACCTGACGCTTCAATTGCCAGCA

Basic information

species Physcomitrella patens
transcript PP1S363_15V6.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S363_15V6.1 (Physcomitrella patens), 3'ss of exon 16
lower sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 20
gtttaactgcgcgtgccatgatggaatgtcacgacggcagtctacatgtcacatattttttgatattttgttaatctagtgtgtttttcggactatt-cagGATGCAGCCGCCTGGCTGGAGTACTTTGATTCTAAAGCTCTGGAGCAACAGGAAGTTGCTCGGATGGGAACGCCAAAACCTGACGCTTCAATTGCCAGCA
          |    |     |    | |  | | |  ||  || |    |||||  |  | ||  || |||  |   |    | | |     |||| ||||||||||| || ||||| || |||||||| || || ||||||||||||||||| | ||| ||||  || || || || || || || |||||  ||||||
----------gtagtcttacctttggtttttctatgatagattaaaa--tacataaatagtaatgctt-gttccttatgcacatatatgaatgtattacagGATGCAGCTGCATGGCTAGAATACTTTGAATCAAAGGCTCTGGAGCAACAGGAGGCTGCACGGAATGGTACACCTAAGCCGGATGCCTCAATCTCCAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcacatattttttgatattttgttaatctagtgtgtttttcggactattcagGATGCAGCCGCCTGGCTGGAGTACTTTGATTCTAAAGCTCTGGAGCAACAGGAAGTTGCTCGGATGGGAACGCCAAAACCTGACGCTTCAATTGCCAGCA
                       tgttaat  putative branch site (score: 3)
     acatattttttgatat  TA-rich tract