1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tttcatgtggtacggcaactttgggttacacatctgcatttttaggagtaaatattttgtttgcagaaaaatttaagataattctggcttgttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGACAGAGAACATCATGGCAACTGATAACGCTGTGTCCGCACTTGGCAAGAT
species | Physcomitrella patens |
transcript | PP1S31_225V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAG ATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGAEST: gi|162182754|gb|FC359501.1|FC359501
genomic: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAGgttggttttc ... gttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGA
EST: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAG ATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGAEST: gi|7147872|gb|AW509794.1|AW509794
genomic: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAGgttggttttc ... gttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGA
EST: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAG ATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGAEST: gi|162158246|gb|FC335289.1|FC335289
genomic: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAGgttggttttc ... gttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGA
EST: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAG ATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGA
genomic: TGGAGTATGTGCTGAATTTGGTGGAGATGCATTCAAGCCATTAGTAGGAGgttggttttc ... gttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGA
gagtaaatattttgtttgcagaaaaatttaagataattctggcttgttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGACAGAGAACATCATGGCAACTGATAACGCTGTGTCCGCACTTGGCAAGAT
agaaaaatttaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatgtggtacggcaactttgggttacacatctgcatttttaggagtaaatattttgtttgcagaaaaatttaagataattctggcttgttgcggcagATGCTCTCGCAAGACTTAATGCTACTATCAGTCAACCCACCTCACGCTCGACAGAGAACATCATGGCAACTGATAACGCTGTGTCCGCACTTGGCAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA