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...tacgctctagttgtgtcgggggaatcaactgtgttgctgggtagaactagctggagtgacatacaaatggctgttaatcattcattttattctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGATCACAGCCTAGAGCAACTCCGCGCGCCAAGCCTGGTCCTATTGAGCGTG
species | Physcomitrella patens |
transcript | PP1S313_34V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAA GGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGAEST: gi|162188370|gb|FC364240.1|FC364240
genomic: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAAgtatgtgttg ... tctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGA
EST: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAA GGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATACTGGAEST: gi|18341254|gb|BJ173288.1|BJ173288
genomic: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAAgtatgtgttg ... tctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGA
EST: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAA GGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGAEST: gi|18333144|gb|BJ165158.1|BJ165158
genomic: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAAgtatgtgttg ... tctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGA
EST: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAA GGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGAEST: gi|162188369|gb|FC364239.1|FC364239
genomic: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAAgtatgtgttg ... tctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGA
EST: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAA GGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATACTGGA
genomic: CTGGGATCGGGGACAACGATTGGACTGCTTCATTAAGAAGCCCTCTGAAAgtatgtgttg ... tctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGA
actagctggagtgacatacaaatggctgttaatcattcattttattctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGATCACAGCCTAGAGCAACTCCGCGCGCCAAGCCTGGTCCTATTGAGCGTG
tgttaat putative branch site (score: 8)
ttttattct putative PPT
ttaatcattcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgctctagttgtgtcgggggaatcaactgtgttgctgggtagaactagctggagtgacatacaaatggctgttaatcattcattttattctgctacagGGTATGTGTCCGAGACTGAATCATTGGAGACAAGTCGGTTTTGATCCTGGATCACAGCCTAGAGCAACTCCGCGCGCCAAGCCTGGTCCTATTGAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA