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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttatttttccaacacacttttgtaaatcctgaaaacattttgaatattgtcactggaggttctgcgtgatgatgtaatgggtccattcttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGGCCAATTCGACAAGGGTCACTGCTAGATCGATTTGCCAATGGTGATAATG

Basic information

species Physcomitrella patens
transcript PP1S279_16V6.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162235437|gb|FC411572.1|FC411572
EST:     TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG                         GTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
genomic: TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGgtaattagta ... ttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
EST: gi|162162921|gb|FC338131.1|FC338131
EST:     CATAAACCTACAG                         GTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
genomic: CATAAACCTACAGgtaattagta ... ttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
EST: gi|162164230|gb|FC342045.1|FC342045
EST:     TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG                         GTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
genomic: TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGgtaattagta ... ttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
EST: gi|162235438|gb|FC411573.1|FC411573
EST:     TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG                         GTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
genomic: TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGgtaattagta ... ttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
EST: gi|162164231|gb|FC342046.1|FC342046
EST:     TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG                         GTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG
genomic: TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGgtaattagta ... ttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgtcactggaggttctgcgtgatgatgtaatgggtccattcttgcggacagGTACCAGCCTCTCCCAACTACAGCCTAGTCATGTACTTCGTATCTGAGAGGCCAATTCGACAAGGGTCACTGCTAGATCGATTTGCCAATGGTGATAATG
                                      tccattctt  CT-rich tract
                            atgtaat  TA-rich tract