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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtttaagccagtcgcacgtggaaatagcaattttgttaaatcttacattgtatttttcttgaagaatctaatgtaacactttggaccatttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAATTCAACCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATG

Basic information

species Physcomitrella patens
transcript PP1S26_191V6.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191131|gb|FC367393.1|FC367393
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37820996|gb|BJ579062.1|BJ579062
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37852688|gb|BJ610696.1|BJ610696
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|162191132|gb|FC367394.1|FC367394
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|37822697|gb|BJ580763.1|BJ580763
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
EST: gi|162162150|gb|FC337724.1|FC337724
EST:     TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAG                         TTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT
genomic: TGTCATCAAATCCTTACACAGATTTTGTCTTTCAGGCAGCAGTACCAAAGgttattgtct ... tttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattgtatttttcttgaagaatctaatgtaacactttggaccatttactgcagTTCATGCAATTGCAGTTGGAGCCTGCTACAAGTGGAATTCTTCCTGCTAATTCAACCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATG
                           atgtaac  putative branch site (score: 3)
       tatttttctt  TA-rich tract