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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgcctactactgcatctaattgatggcagcatgtcaattgtgtgcttgttggcctgacttgtttagataggcagaccatttgatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_87V6.1 (Physcomitrella patens), 3'ss of exon 16
lower sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 15
gtaggtgcctactactgcatctaattgatggcagcatgtcaattgtgtgcttgttggcctgacttgtttagataggcagaccatttgatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG
                                   |||  |    | |||   ||   ||||| ||    ||| ||    |  |||    |   ||| |   | |  |  | || ||   | |   | |  |       || | || || ||||| ||||| ||||||||||| ||| ||||||| || ||||||||||| || ||  | ||||| |||
---------------------------------caatgagacccttctgcaaatt--tctgacctgcaacgattggtttgcagtttctgtttctatattataatttattacttg-ctcaatctaatcttcaacc-----agGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67579146|gb|BJ951297.1|BJ951297
EST:     TGGTTNCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG
                                              ttcct  CT-rich tract
                            acttttt  TA-rich tract