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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgcctactactgcatctaattgatggcagcatgtcaattgtgtgcttgttggcctgacttgtttagataggcagaccatttgatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_87V6.1 (Physcomitrella patens), 3'ss of exon 16
lower sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 15
gtaggtgcctactactgcatctaattgatggcagcatgtcaattgtgtgcttgttggcctgacttgtttagataggcagaccatttgatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG
                                   |||  |    | |||   ||   ||||| ||    ||| ||    |  |||    |   ||| |   | |  |  | || ||   | |   | |  |       || | || || ||||| ||||| ||||||||||| ||| ||||||| || ||||||||||| || ||  | ||||| |||
---------------------------------caatgagacccttctgcaaatt--tctgacctgcaacgattggtttgcagtttctgtttctatattataatttattacttg-ctcaatctaatcttcaacc-----agGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162166154|gb|FC342591.1|FC342591
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162170485|gb|FC347644.1|FC347644
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|18333971|gb|BJ165987.1|BJ165987
EST:     TGGTTGCNTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162198122|gb|FC373072.1|FC373072
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162193748|gb|FC371275.1|FC371275
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162196621|gb|FC374911.1|FC374911
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162159475|gb|FC336264.1|FC336264
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|37850442|gb|BJ608450.1|BJ608450
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162193749|gb|FC371276.1|FC371276
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162215686|gb|FC391414.1|FC391414
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|18332811|gb|BJ164824.1|BJ164824
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162192137|gb|FC368286.1|FC368286
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162192138|gb|FC368287.1|FC368287
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162196875|gb|FC375152.1|FC375152
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|67579146|gb|BJ951297.1|BJ951297
EST:     TGGTTNCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162166155|gb|FC342592.1|FC342592
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162244980|gb|FC424938.1|FC424938
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|162170471|gb|FC347643.1|FC347643
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|67691660|gb|BJ951893.1|BJ951893
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
EST: gi|208381985|gb|DC923844.1|DC923844
EST:     TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGG                         ATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT
genomic: TGGTTGCCTCAGATGCAAATTTGAAGAAAGCACCTGTTAACCATGAAGGGgtaggtgcct ... attcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatcagatactgacactagtggcctgactttttgtgtgcctggattcctaaagATTCGTGTCTCTGGGTATGGAGGATGGTTTCTGCTTCGATTATCCCTACATGATCCTGTTCTGCCGTTGAACATCGAG
                                              ttcct  CT-rich tract
                            acttttt  TA-rich tract