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gtacattcaaactcggaatatacttgcactcttctgcaggttttccagcactaacgaatagaatattttacgggtatgccttgtcgacttcctccttacttagtttactgatcggctctccaagtacttgctgcaactctctattgtggtatgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTCCCTGATCTTTCTGGGACAG
species | Physcomitrella patens |
transcript | PP1S14_250V6.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|162238755|gb|FC419053.1|FC419053
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|37822061|gb|BJ580127.1|BJ580127
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|6102231|gb|AW126701.1|AW126701
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|19787424|gb|BQ040623.1|BQ040623
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|18340446|gb|BJ172474.1|BJ172474
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: CTAGCTGTTGGCGGTTCAGACATAAGG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTEST: gi|67726008|gb|BJ976267.1|BJ976267
genomic: CTAGCTGTTGGCGGTTCAGACATAA-Ggtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|162167817|gb|FC344547.1|FC344547
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|37852835|gb|BJ610843.1|BJ610843
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|162257669|gb|FC433596.1|FC433596
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|37830480|gb|BJ588492.1|BJ588492
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTEST: gi|162182528|gb|FC357503.1|FC357503
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
EST: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAG GTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
genomic: GAATTTGATTACAGTGGAAGCTACCTAGCTGTTGGCGGTTCAGACATAAGgtacattcaa ... tgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTT
actgatcggctctccaagtacttgctgcaactctctattgtggtatgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTCCCTGATCTTTCTGGGACAG
tactgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattcaaactcggaatatacttgcactcttctgcaggttttccagcactaacgaatagaatattttacgggtatgccttgtcgacttcctccttacttagtttactgatcggctctccaagtacttgctgcaactctctattgtggtatgtcatgcagGTTGTATCAAGTAGCAAGTGTCAAGCAGGAGTGGAATACCATTAAAGTTTTCCCTGATCTTTCTGGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA