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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccactattagcaacctaagacaaatcggagtctttcttgtggacatattgctgcactcaaatacctgctctttagcattttgcaacgtgtttttttttttttttctttctttctttcgccgcagttcctttattcatgctggtgattacatgctgtggttgttgcagCTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTTACCTGAAATCAAGCCAGTTACAACTCAATTTCTCTAAACAAACTGCATT

Basic information

species Physcomitrella patens
transcript PP1S129_147V6.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161759|gb|FC337900.1|FC337900
EST:     TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAA                         CTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT
genomic: TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAAgtacgccact ... gttgttgcagCTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT
EST: gi|162167452|gb|FC343155.1|FC343155
EST:     TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAA                         CTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT
genomic: TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAAgtacgccact ... gttgttgcagCTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT
EST: gi|162177884|gb|FC355134.1|FC355134
EST:     TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAA                         CTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT
genomic: TCCTCTTGGTTACACTTCGTTCGTGGTTCGGCCATCGTCTTCCAATACAAgtacgccact ... gttgttgcagCTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgccgcagttcctttattcatgctggtgattacatgctgtggttgttgcagCTACTGCCAAAATGTCATCGTACGAAACCCGAAGAGTGGGTCGCAGTGTTTACCTGAAATCAAGCCAGTTACAACTCAATTTCTCTAAACAAACTGCATT
                tttattcat  TA-rich tract