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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctagcatggcttgactttcaactcttaaagtgttgacgtaaataaggataatttgaataatgtaataagttctacatcttgtttcttcgtgtggttttcacctgaactattactctgtagATTCCTTATGACGGCTCTAGAGCTTTTGGGAAAGCTTGTGGAGACGTTTGGTCCGATTATCCATGCCACTCGAACTTCCGCACCATCAATAGGGGTCGAC

Basic information

species Physcomitrella patens
transcript PP1S9_241V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162204000|gb|FC379369.1|FC379369
EST:     TATTTGTTAATCCCCTTGTTAAATGGTCTTCTTAGTACAGACAACGACAG                         ATTCCTTATGACGGCTCTAGAGCTTTTGGGAAAGCTTGTGGAGACGTTTGG
genomic: TATTTGTTAATCCCCTTGTTAAATGGTCTTCTTAGTACAGACAACGACAGgtaatctagc ... tactctgtagATTCCTTATGACGGCTCTAGAGCTTTTGGGAAAGCTTGTGGAGACGTTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttctacatcttgtttcttcgtgtggttttcacctgaactattactctgtagATTCCTTATGACGGCTCTAGAGCTTTTGGGAAAGCTTGTGGAGACGTTTGGTCCGATTATCCATGCCACTCGAACTTCCGCACCATCAATAGGGGTCGAC
                                            ttactct  CT-rich tract
                                       aactatta  TA-rich tract