1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cttcatacctgtacatcctcacacattgcgtcaataaatccaagtcgtccttaggctgtaatcctgattaatgtttttcctctttctctctctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCGATGTAATTGAAACCGGCAACAGACAAGGATTTCCGAAGGATCAGACGG
species | Physcomitrella patens |
transcript | PP1S81_165V6.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|37822648|gb|BJ580714.1|BJ580714
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|162155141|gb|FC330935.1|FC330935
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|37824049|gb|BJ582115.1|BJ582115
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|162155140|gb|FC330934.1|FC330934
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|37851125|gb|BJ609133.1|BJ609133
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|162199150|gb|FC374596.1|FC374596
genomic: CAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCEST: gi|37839286|gb|BJ597294.1|BJ597294
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACEST: gi|162256335|gb|FC432345.1|FC432345
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAAT-Ggtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAAC
EST: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATG AAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
genomic: CTTTGAGGGGAGGTGGTGCACCAACATCTGCAAACGGCACCACCACAATGgtaatttgcc ... tctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACC
cgtccttaggctgtaatcctgattaatgtttttcctctttctctctctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCGATGTAATTGAAACCGGCAACAGACAAGGATTTCCGAAGGATCAGACGG
gattaat putative branch site (score: 3)
tgtttttcctctttct CT-rich tract
tgattaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatacctgtacatcctcacacattgcgtcaataaatccaagtcgtccttaggctgtaatcctgattaatgtttttcctctttctctctctgcaccagAAAGCCAATGTTGATGAGCACTCGCACGAAGTTACAGCCGAGAAACCAACCGATGTAATTGAAACCGGCAACAGACAAGGATTTCCGAAGGATCAGACGG
- - - - ctgtaca