1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ccttttggaataaatgctaactgcacaagcaaaacttttattttagtttctagcgtgtaatcgaataccatttggctgaccctggttgccttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAGGGCAGTGCAAGCTCAGGGGAGCTACGTCTCACGATGGTCGAGATCCAG
species | Physcomitrella patens |
transcript | PP1S70_200V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAG GACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAEST: gi|162191700|gb|FC367433.1|FC367433
genomic: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAGgtgcgtaatg ... ttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCA
EST: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAG GACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAEST: gi|37835394|gb|BJ593406.1|BJ593406
genomic: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAGgtgcgtaatg ... ttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCA
EST: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAG GACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAEST: gi|37832511|gb|BJ590523.1|BJ590523
genomic: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAGgtgcgtaatg ... ttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCA
EST: GAGTTTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAG GACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCA
genomic: GAGTCTTACAGGCCAAAAGGAGGCTTAATTTCCATAAACATCGCTGACAGgtgcgtaatg ... ttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCA
gtttctagcgtgtaatcgaataccatttggctgaccctggttgccttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAGGGCAGTGCAAGCTCAGGGGAGCTACGTCTCACGATGGTCGAGATCCAG
ggctgac putative branch site (score: 19)
ttgcctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttttggaataaatgctaactgcacaagcaaaacttttattttagtttctagcgtgtaatcgaataccatttggctgaccctggttgccttgcaaacagGACTGGCCAAGCAGTAGCCGCACTGTTGAGGAGACTACGGCTGAAAGCTCAGGGCAGTGCAAGCTCAGGGGAGCTACGTCTCACGATGGTCGAGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - -cacaagc