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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtgcccgcgagaatttgagagcagctttccttgcaatgtggtcacacttttccagtctagatgtatttgaaacttactctaggttgctgagtgtacagGTTGCTAAACCGAGAGCATTGGTAGAAATCAAACCAGCAATCGCTAAAGGACTTCTTTTTGGCGAGCCACAGTGGGTAGGTTTGATCATTAGACCTCTTG

Basic information

species Physcomitrella patens
transcript PP1S6_294V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149773|gb|FC325888.1|FC325888
EST:     ATAGCGATGATTATTTAAGTAACGAGAAACCCATTCGGATTGTATTGGAG                         GTTGCTAAACCGAGAGCATTGGTAGAAATCAAACCAGCAATCGCTAAAGGA
genomic: ATAGCGATGATTATTTAAGTAACGAGAAACCCATTCGGATTGTATTGGAGgttgttacca ... gagtgtacagGTTGCTAAACCGAGAGCATTGGTAGAAATCAAACCAGCAATCGCTAAAGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacttttccagtctagatgtatttgaaacttactctaggttgctgagtgtacagGTTGCTAAACCGAGAGCATTGGTAGAAATCAAACCAGCAATCGCTAAAGGACTTCTTTTTGGCGAGCCACAGTGGGTAGGTTTGATCATTAGACCTCTTG
                           aacttac  putative branch site (score: 2)
                    tatttgaaa  TA-rich tract