Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaccactaatcagtttttaattttgctagtgtttatattatatgacctttttattttttaattttttatgggcgttggtattgaattttacaattttcagATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTGAATCCGTATAAAGTGCTTCCCGGCACTTCAAAAACAGTCTCTACTCCTG

Basic information

species Physcomitrella patens
transcript PP1S6_281V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250897|gb|FC425719.1|FC425719
EST:     TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCT                         ATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG
genomic: TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCTgtaagtcttt ... caattttcagATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG
EST: gi|37830463|gb|BJ588475.1|BJ588475
EST:     TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCT                         ATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG
genomic: TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCTgtaagtcttt ... caattttcagATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG
EST: gi|162152851|gb|FC328945.1|FC328945
EST:     TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCT                         ATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG
genomic: TGGGTTTGATGAAGCCTCATGCGCTTCACTACAGCAAGTCGGCTGAAGCTgtaagtcttt ... caattttcagATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttattttttaattttttatgggcgttggtattgaattttacaattttcagATAGCGCTTATGGAGAGGTTCAAGGCTCTCCTAGATCCTAAAGGCATCTTGAATCCGTATAAAGTGCTTCCCGGCACTTCAAAAACAGTCTCTACTCCTG
          ttttaat  putative branch site (score: 3)
                                                ttttc  putative PPT
     ttattttttaattttt  TA-rich tract