1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgggctaaactaactaggacgctttatcccacaaattagtttttttcccttgtttttatcacacagtttacatttttgttttgtggtattagtttttagttatgggatccgtactgattgcctacgtcattttcgtcactaaaagacacttattcaactcatgttttttcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGCGGTGCCGCTTCAGCTCCAAAGAGAGGTCGTGGAGATGGAATGACTAGT
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|162186311|gb|FC361619.1|FC361619
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|162202250|gb|FC377586.1|FC377586
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|162202249|gb|FC377585.1|FC377585
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|208347797|gb|DC921124.1|DC921124
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|37833862|gb|BJ591874.1|BJ591874
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|37832307|gb|BJ590319.1|BJ590319
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTNTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|18333154|gb|BJ165168.1|BJ165168
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|162177458|gb|FC353719.1|FC353719
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGEST: gi|18333973|gb|BJ165989.1|BJ165989
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
EST: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGG GAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
genomic: CCAACTTCGGCTCCAACACATGCCGTTTCTGCAACACAACACAATGGAGGgtgggctaaa ... tcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGG
acgtcattttcgtcactaaaagacacttattcaactcatgttttttcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGCGGTGCCGCTTCAGCTCCAAAGAGAGGTCGTGGAGATGGAATGACTAGT
cactaaa putative branch site (score: 6)
ttttttcattt putative PPT
atgttttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggctaaactaactaggacgctttatcccacaaattagtttttttcccttgtttttatcacacagtttacatttttgttttgtggtattagtttttagttatgggatccgtactgattgcctacgtcattttcgtcactaaaagacacttattcaactcatgttttttcatttgcagGAAGAAGCGCCAAAATCAAAACAACCAGAACAGTCATAATAACCAAAATGGCGGTGCCGCTTCAGCTCCAAAGAGAGGTCGTGGAGATGGAATGACTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA