1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ctaataagtagataataaattctctgttgtaactactcaaaatttactcgactatcatattcccatgatttgaagttatcgttgctgaattggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTCGGACAACTGGGGCACCCCAGAATCATTG
species | Physcomitrella patens |
transcript | PP1S41_177V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|37825115|gb|BJ583181.1|BJ583181
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162192524|gb|FC368634.1|FC368634
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162263738|gb|FC439637.1|FC439637
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162278733|gb|FC454843.1|FC454843
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|18334344|gb|BJ166361.1|BJ166361
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|208394915|gb|DC924134.1|DC924134
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162230101|gb|FC406249.1|FC406249
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162278732|gb|FC454842.1|FC454842
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|162214450|gb|FC391209.1|FC391209
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|37823906|gb|BJ581972.1|BJ581972
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|67692630|gb|BJ952863.1|BJ952863
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTEST: gi|208397350|gb|DC916318.1|DC916318
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
EST: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAG GAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
genomic: ATGCACATCTTACTGCTGCGGTTGTTTCTAACGATGTTCATTTCTTACAGgttaatatac ... tggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCT
actcgactatcatattcccatgatttgaagttatcgttgctgaattggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTCGGACAACTGGGGCACCCCAGAATCATTG
tatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaataagtagataataaattctctgttgtaactactcaaaatttactcgactatcatattcccatgatttgaagttatcgttgctgaattggtttacagGAAGTCTTGAGCAACACTGTTAACGGAACGACTTATGCTGGCATCCGAGCTCGGACAACTGGGGCACCCCAGAATCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa