1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttcatttgcttaaccttttccaagaacaccaaacaaaacaacattctgttcgtacttccgcgtgatgtggtttaggtgactttttttctcgattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGTGTAGTAGAGCCAGCCATGAGCAAAGTTAAAATTATTCAG
species | Physcomitrella patens |
transcript | PP1S39_248V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGG AACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGEST: gi|37843579|gb|BJ601587.1|BJ601587
genomic: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGGgtatgtactt ... gattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
EST: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGG AACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGEST: gi|37837901|gb|BJ595909.1|BJ595909
genomic: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGGgtatgtactt ... gattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
EST: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGG AACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGEST: gi|208386140|gb|DC949051.1|DC949051
genomic: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGGgtatgtactt ... gattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
EST: CATACCCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGG AACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGEST: gi|37852530|gb|BJ610538.1|BJ610538
genomic: CATA-CCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGGgtatgtactt ... gattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
EST: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGG AACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
genomic: GCATACCACCACAGTTCTCAAACGAAGGCTGACAAGCAGCACCTTGCTGGgtatgtactt ... gattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGG
ctgttcgtacttccgcgtgatgtggtttaggtgactttttttctcgattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGTGTAGTAGAGCCAGCCATGAGCAAAGTTAAAATTATTCAG
ctttttttctcgatt CT-rich tract
acttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttgcttaaccttttccaagaacaccaaacaaaacaacattctgttcgtacttccgcgtgatgtggtttaggtgactttttttctcgattgttcagAACTGGATTGGACTTGATCAAGGGAGTGGTGAGAAACAACATCGACGCTGGTGTAGTAGAGCCAGCCATGAGCAAAGTTAAAATTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG