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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttccttctgtatggtcgacttcattattagttttctgttttttaatcggtcggggtttcttcatattagtctatttttgtagtaagcgtgattcttagattcgtgtgcatcacaatctttttccgtatttgcaagtctgatattttcttcctattctgtttacagGGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTCATCAGTATCTTGATTATTCTTACATTTTTAGCCTTCCACTTTTCTACAG

Basic information

species Physcomitrella patens
transcript PP1S357_34V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37822242|gb|BJ580308.1|BJ580308
EST:     TCAGCTTCTATCTTGTGGCTCAAACCACCATGAATCTCCCAAAGCTCTTG                         GGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTC
genomic: TCAGCTTCTATCTTGTGGCTCAAACCACCATGAATCTCCCAAAGCTCTTGgtatgttcct ... ctgtttacagGGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTC
EST: gi|208368050|gb|DC955429.1|DC955429
EST:     TCAGCTTCTATCTTGTGGCTCAAACCACCATGAATCTCCCAAAGCTCTTG                         GGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTC
genomic: TCAGCTTCTATCTTGTGGCTCAAACCACCATGAATCTCCCAAAGCTCTTGgtatgttcct ... ctgtttacagGGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaatctttttccgtatttgcaagtctgatattttcttcctattctgtttacagGGTTTGTAGGTGGAGGAAATCTGTAGTTAGACCCCTTCTTCATGATACCTCATCAGTATCTTGATTATTCTTACATTTTTAGCCTTCCACTTTTCTACAG
                        gtctgat  putative branch site (score: 4)
                              tattttcttcctattc  CT-rich tract
                             atattttctt  TA-rich tract