1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagacatcatcattcactgattcatgtacaagatgggcgctgcctaaaaaaattatctgttggttttgacgagagaagaacccttacaagaaccttggcgtgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAAGGCATTGGATGGGGCTGGGCTGGAGTCATCTGGCTATACAGCATAGTCA
species | Physcomitrella patens |
transcript | PP1S321_30V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTG ATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAAEST: gi|100363819|gb|BY966186.1|BY966186
genomic: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTGgtaagacatc ... tgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAA
EST: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTG ATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAAEST: gi|100442101|gb|BY962994.1|BY962994
genomic: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTGgtaagacatc ... tgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAA
EST: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTG ATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAA
genomic: TGGAGAGACCAGGAGGGTTGCTCATGTTTGCATTTGTGGCTGCTCAGCTGgtaagacatc ... tgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAA
tctgttggttttgacgagagaagaacccttacaagaaccttggcgtgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAAGGCATTGGATGGGGCTGGGCTGGAGTCATCTGGCTATACAGCATAGTCA
cccttac putative branch site (score: 8)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacatcatcattcactgattcatgtacaagatgggcgctgcctaaaaaaattatctgttggttttgacgagagaagaacccttacaagaaccttggcgtgttctgcagATTGCCACATTCATTTCAGTGTATGCGAACTGGGGATTTGCCAGTATCAAAGGCATTGGATGGGGCTGGGCTGGAGTCATCTGGCTATACAGCATAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA