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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttacagtcactaaatttgtatctttcgtatttgattttttattgtaactcacttccgcgatgtcgtttttaacatcatattgtctcttgtgccgtgtagAAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCTATTATGGCAGAAAGCATGCTAGAGGCAACTGTCAACTTTCAAACTGGTG

Basic information

species Physcomitrella patens
transcript PP1S31_313V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162224845|gb|FC401053.1|FC401053
EST:     TTGCGGAGCAGGAGGCTGAGACGCACCGGCGTACTGCTGAAGAAGCGGAG                         AAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCT
genomic: TTGCGGAGCAGGAGGCTGAGACGCACCGGCGTACTGCTGAAGAAGCGGAGgtattttatt ... tgccgtgtagAAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCT
EST: gi|162251685|gb|FC426091.1|FC426091
EST:     TTGCGGAGCAGGAGGCTGAGACGCACCGGCGTACTGCTGAAGAAGCGGAG                         AAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCT
genomic: TTGCGGAGCAGGAGGCTGAGACGCACCGGCGTACTGCTGAAGAAGCGGAGgtattttatt ... tgccgtgtagAAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactcacttccgcgatgtcgtttttaacatcatattgtctcttgtgccgtgtagAAAACAGCTGCCGAGGCGGTAGCTGCTCTGTCAGCTATGGAAAAGAGAGCTATTATGGCAGAAAGCATGCTAGAGGCAACTGTCAACTTTCAAACTGGTG
                      ttttaac  putative branch site (score: 2)
                                      tctcttgt  putative PPT
                     tttttaacatcatatt  TA-rich tract