1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgaggcatcggttctcatctttgtgatttcttcgacgttctccttttcaaggatttcttgatgtctccattcgacatgtgatgcagagctagtagaactagatttaaactatagatcacaaggttctacgatttgttcatactgctcggccaccacaatcgattgttaattattttgtgtgttatgctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
species | Physcomitrella patens |
transcript | PP1S279_16V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAA TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGEST: gi|162164230|gb|FC342045.1|FC342045
genomic: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAAgtgaggcatc ... gctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
EST: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAA TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGEST: gi|162235438|gb|FC411573.1|FC411573
genomic: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAAgtgaggcatc ... gctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
EST: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAA TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAGEST: gi|162164231|gb|FC342046.1|FC342046
genomic: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAAgtgaggcatc ... gctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
EST: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAA TCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
genomic: CCGATAAGAGGATTGACAACGTTGCCAAACGACCTAGCTGCTGCGTTCAAgtgaggcatc ... gctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
actgctcggccaccacaatcgattgttaattattttgtgtgttatgctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
tgttaat putative branch site (score: 9)
attgttaattattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcatcggttctcatctttgtgatttcttcgacgttctccttttcaaggatttcttgatgtctccattcgacatgtgatgcagagctagtagaactagatttaaactatagatcacaaggttctacgatttgttcatactgctcggccaccacaatcgattgttaattattttgtgtgttatgctgtattagTCTGATGCAGGCAAGAAAGCGCCATTCATTCTTATCATAAACCTACAG
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