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...ttttacttttaatgcgcgaatcatacacttacatttttgttcattttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
species | Physcomitrella patens |
transcript | PP1S222_130V6.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162220369|gb|FC395737.1|FC395737
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162153066|gb|FC330096.1|FC330096
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCANGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGGAAAEST: gi|162208214|gb|FC384318.1|FC384318
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGG-AAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|15730173|gb|BI741714.1|BI741714
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GCTGCATGGGAGATATTTACACCATTGTTGCATCGGATTGATGCTGGAAAAEST: gi|162211596|gb|FC387676.1|FC387676
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|18339482|gb|BJ171509.1|BJ171509
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|37823531|gb|BJ581597.1|BJ581597
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|67698044|gb|BJ958277.1|BJ958277
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162153065|gb|FC330095.1|FC330095
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162259274|gb|FC435671.1|FC435671
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162243422|gb|FC425118.1|FC425118
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: GGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|37827352|gb|BJ585364.1|BJ585364
genomic: GGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|37844665|gb|BJ602673.1|BJ602673
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162259275|gb|FC435672.1|FC435672
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162276852|gb|FC452534.1|FC452534
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|37829780|gb|BJ587792.1|BJ587792
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|37851060|gb|BJ609068.1|BJ609068
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|67694438|gb|BJ954671.1|BJ954671
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TNTTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162243423|gb|FC425119.1|FC425119
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: GGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|67578605|gb|BJ950772.1|BJ950772
genomic: GGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
ttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
gactaat putative branch site (score: 2)
tctctgctc putative PPT
taaatttgactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttacttttaatgcgcgaatcatacacttacatttttgttcattttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG