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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggatttcattcctggaattatgatttagaatctttggtttacttgtgcaaataaatgataatgtaaataatcgctgtgaaaatgccgatttcaaaaactttgtcgtccaacgcatttgttgttacttcgcagCTCAAATTTCCAATCAAACCAGTTGATTTGAAGAAGAGAATCGAGAGTCTGATTGACCGGGAGTATCTTGAAAGGGACAAAGCCAATCCTCAGATTTACA

Basic information

species Physcomitrella patens
transcript PP1S143_152V6.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S143_152V6.1 (Physcomitrella patens), 3'ss of exon 15
lower sequence: GLYMA15G10030.1 (Glycine max), 3'ss of exon 16
gtgaggatttcattcctggaattatgatttagaatctttggtttacttgtgcaaataaatgataatgtaaataatcgctgtgaaaatgccgatttcaaaaactttgtcgtccaacgcatttgttgttacttcgcagCTCAAATTTCCAATCAAACCAGTTGATTTGAAGAAGAGAATCGAGAGTCTGATTGACCGGGAGTATCTTGAAAGGGACAAAGCCAATCCTCAGATTTACA
                     || || |  |  |    || | | ||| || | | | |   |  | |   | || | |  |  ||| |  |||| |  || |   |           ||| ||||   |   ||||||||||||||||| ||||||| ||| |||||||| || ||||| || ||||||||| |||||||||| || || |||||   ||| ||||| || ||||
--------------------gttgtg-tacaatacaagtgatct-cttttg-atacagactgttttctctctgattgataagttaatactaatttaaggaagtgaat-----------ttttttgtg--tgaacagCTCAAATTTCCAATAAAACCAGCTGACTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGAGACAAGAACAACCCTCAAATATACA

upper sequence: PP1S143_152V6.1 (Physcomitrella patens), 3'ss of exon 15
lower sequence: GLYMA13G29010.1 (Glycine max), 3'ss of exon 17
gtgaggatttcattcctggaattatgatttagaatctttggtttacttgtgcaaataaatgataatgtaaataatcgctgtgaaaatgccgatttcaaaaactttgtcgtccaacgcatttgttgttacttcgcagCTCAAATTTCCAATCAAACCAGTTGATTTGAAGAAGAGAATCGAGAGTCTGATTGACCGGGAGTATCTTGAAAGGGACAAAGCCAATCCTCAGATTTACA
                     ||||| | |  |    ||   |   |||   |   | |   |  | |   | || | |  || ||| | ||||| |  || |          |    |||  ||| |     ||||||||||||||||| ||||||| ||| |||||||| || ||||| || ||||||||  |||||||||| || || |||||   ||| ||||| || ||||
--------------------cttatgttgtgtacaagttatctcttttg---atgcagactgttttctgtctgattgttaagataatactgatttaaggaagt---------gatttttttcatgtga----acagCTCAAATTTCCAATAAAACCAGCTGACTTGAAGAAAAGGATCGAAAGCCTGATTGATAGGGAGTATCTGGAGAGAGACAAGAACAACCCTCAAATATACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaatgccgatttcaaaaactttgtcgtccaacgcatttgttgttacttcgcagCTCAAATTTCCAATCAAACCAGTTGATTTGAAGAAGAGAATCGAGAGTCTGATTGACCGGGAGTATCTTGAAAGGGACAAAGCCAATCCTCAGATTTACA
                                            ttacttc  CT-rich tract
          atttcaaaaacttt  TA-rich tract