1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtataatatcttaatcacctcttgaaattgtccactttcttgcatacagttgcgtaatcctgtcagaaattattagttgagatttctttcatatcgtctcgctatctgaacatctactggggagtagcgtacttatcttttaattaagacatcccgtgtgtgttaattgtgtttccggtgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGGCCAACGAGACGCCGTCAGATGTCAAGCTAGGTATTGGCCGAGCCGTAA
species | Physcomitrella patens |
transcript | PP1S143_122V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAATCGTGTATGGTTGCCTATGTGGGCTTGTTTTAGCTGGTCATTCGGAG ATACTTCTTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGEST: gi|162164284|gb|FC342099.1|FC342099
genomic: AAATCGTGTATGGTTGCCTATGTGGGCTTGTTTTAGCTGGTCATTCGGAGgtataatatc ... tgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTG
EST: AAATCGTGTATGGTTGCTTATGTGGGCTTGTTTTAGCTGGTCATTCGGAG ATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGEST: gi|162187154|gb|FC363664.1|FC363664
genomic: AAATCGTGTATGGTTGCCTATGTGGGCTTGTTTTAGCTGGTCATTCGGAGgtataatatc ... tgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTG
EST: AAATCGTGTATGGTTGCTTATGTGGGCTTGTTTTAGCTGGTCATTCGGAG ATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGEST: gi|162201179|gb|FC377686.1|FC377686
genomic: AAATCGTGTATGGTTGCCTATGTGGGCTTGTTTTAGCTGGTCATTCGGAGgtataatatc ... tgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTG
EST: AAATCGTGTATGGTTGCTTATGTGGGCTTGTTTTAGCTGGTCATTCGGAG ATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTG
genomic: AAATCGTGTATGGTTGCCTATGTGGGCTTGTTTTAGCTGGTCATTCGGAGgtataatatc ... tgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTG
tatcttttaattaagacatcccgtgtgtgttaattgtgtttccggtgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGGCCAACGAGACGCCGTCAGATGTCAAGCTAGGTATTGGCCGAGCCGTAA
tgttaat putative branch site (score: 2)
tttaattaagacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatatcttaatcacctcttgaaattgtccactttcttgcatacagttgcgtaatcctgtcagaaattattagttgagatttctttcatatcgtctcgctatctgaacatctactggggagtagcgtacttatcttttaattaagacatcccgtgtgtgttaattgtgtttccggtgttacacagATACTTCCTCTGGTCCCACAGCTGATATCCGTTTTCGCGAAGGCGGTGGTGGCCAACGAGACGCCGTCAGATGTCAAGCTAGGTATTGGCCGAGCCGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT