1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...attggaacgtgattcatttagtacaaaatgacagataggagggaatgggagtacctgctttgcttttgagtatcatttgatgtttgttgtttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAATATTGCCTTCGAGTCAAAGAAACAGGCCCTCGAGAACG
species | Physcomitrella patens |
transcript | PP1S12_178V6.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAA AATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAAEST: gi|162234488|gb|FC409519.1|FC409519
genomic: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAAgtgagtgatt ... ttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAA
EST: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAA AATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAAEST: gi|162244441|gb|FC422614.1|FC422614
genomic: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAAgtgagtgatt ... ttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAA
EST: TACA-TTTTTGNCA-GTGTTCCACGCCTTTANCA-TCGTATTTATGATAA AATCACTGGAACAGTGAGGGEST: gi|162231382|gb|FC406805.1|FC406805
genomic: TACAATTTTTG-CAAGTGTTCCACGCCTTTA-CAATCGTATTTATGATAAgtgagtgatt ... ttgtgggtagAATCACTGGAACAGTGAGGG
EST: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAA AATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAA
genomic: CCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAAgtgagtgatt ... ttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAA
tgggagtacctgctttgcttttgagtatcatttgatgtttgttgtttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAATATTGCCTTCGAGTCAAAGAAACAGGCCCTCGAGAACG
atttgat putative branch site (score: 11)
tatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggaacgtgattcatttagtacaaaatgacagataggagggaatgggagtacctgctttgcttttgagtatcatttgatgtttgttgtttgtgggtagAATCACTGGAACAGTGAGGGCTTCAGGTGGACTCCGTGAGAAGCTTTTCAATATTGCCTTCGAGTCAAAGAAACAGGCCCTCGAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA