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gtactctacagcattgatgtcatggttcaagttacataatgatgctatttttatgtcaagaacttctcttgcctactttttgcagaattattactttgaaaactgctcatttttgtgggtaatgtcctcgatttatttatttaatcgtgtctaaaccttttggatacaatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGCAGTCGGAGAACAGGCACGTGGCGATGGTTGGAGACGGCGTCAATGACG
species | Physcomitrella patens |
transcript | PP1S121_53V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162154984|gb|FC331402.1|FC331402
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162256486|gb|FC432517.1|FC432517
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162234163|gb|FC410767.1|FC410767
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162163928|gb|FC340150.1|FC340150
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|22492312|gb|BU052235.1|BU052235
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162196152|gb|FC373493.1|FC373493
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: GCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162180719|gb|FC357804.1|FC357804
genomic: GCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGEST: gi|162168675|gb|FC343937.1|FC343937
genomic: AAGAGGCCGCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
EST: GCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAG GTGTATGCTGGAGTCAAGCCATCT-GAAAAGCAGATTTCATCAGGCAGCTG
genomic: GCAGAAGCTATTGCTGCAAAAGTGGGCATCGATCGACAACAGgtactctaca ... caatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTG
atgtcctcgatttatttatttaatcgtgtctaaaccttttggatacaatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGCAGTCGGAGAACAGGCACGTGGCGATGGTTGGAGACGGCGTCAATGACG
gtctaaa putative branch site (score: 3)
tcgatttatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctacagcattgatgtcatggttcaagttacataatgatgctatttttatgtcaagaacttctcttgcctactttttgcagaattattactttgaaaactgctcatttttgtgggtaatgtcctcgatttatttatttaatcgtgtctaaaccttttggatacaatgtctagGTGTATGCTGGAGTCAAGCCATCTGGAAAAGCAGATTTCATCAGGCAGCTGCAGTCGGAGAACAGGCACGTGGCGATGGTTGGAGACGGCGTCAATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA