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gtgcgatttttctctaactgattcaatcccattactttggtactagattgtttgagttttgtttgtttttcatatctatatgactctgtcttatcgaatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAACAAAGGCCAGAGAGGTCTTGCAGCGAGAGGATGATTTGAATGAGATTG
species | Physcomitrella patens |
transcript | PP1S10_201V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|162156399|gb|FC332631.1|FC332631
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|208375011|gb|DC956407.1|DC956407
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|37832286|gb|BJ590298.1|BJ590298
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|37850222|gb|BJ608230.1|BJ608230
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|208371410|gb|DC955746.1|DC955746
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAEST: gi|67724595|gb|BJ974854.1|BJ974854
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
EST: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAG GCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
genomic: AACATTTTCCAGCAGTGAACTGGCTCATTTCCTACTCCAAGTACACGCAGgtgcgatttt ... aatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGA
ttgagttttgtttgtttttcatatctatatgactctgtcttatcgaatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAACAAAGGCCAGAGAGGTCTTGCAGCGAGAGGATGATTTGAATGAGATTG
tttttcatatctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgatttttctctaactgattcaatcccattactttggtactagattgtttgagttttgtttgtttttcatatctatatgactctgtcttatcgaatgttgcagGCTCTGGAGGGTTTCTATGAAAACTTCGACTCTGATTTTATTGGTATTAGAACAAAGGCCAGAGAGGTCTTGCAGCGAGAGGATGATTTGAATGAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG