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...tcatttagtatttaactttcacgaaacgaagtgatacaagtttcgagctgaatgtttcttctggagacaggaacttatcacattcatttttggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATCAAGATGCTCGCTACCATCACACTGGTCATGGCACCGCTCTTCCTGGAC
species | Physcomitrella patens |
transcript | PP1S105_42V6.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|162185002|gb|FC362448.1|FC362448
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|37849937|gb|BJ607945.1|BJ607945
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|37839867|gb|BJ597875.1|BJ597875
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|162201492|gb|FC377933.1|FC377933
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|37842791|gb|BJ600799.1|BJ600799
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|162185003|gb|FC362449.1|FC362449
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|37851495|gb|BJ609503.1|BJ609503
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATEST: gi|18340186|gb|BJ172214.1|BJ172214
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
EST: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATAC AGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
genomic: TTTGGTGGGAAGGGCAGCGACGCCCATAAAGCGGCGGTTACTGGTGATACgtaagtcaac ... tggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAAT
agctgaatgtttcttctggagacaggaacttatcacattcatttttggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATCAAGATGCTCGCTACCATCACACTGGTCATGGCACCGCTCTTCCTGGAC
ttcattttt CT-rich tract
attcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttagtatttaactttcacgaaacgaagtgatacaagtttcgagctgaatgtttcttctggagacaggaacttatcacattcatttttggattgcagAGTTGGAGATCCTTTTAAAGATACTGCTGGACCTTCTCTCCATGTGCTAATCAAGATGCTCGCTACCATCACACTGGTCATGGCACCGCTCTTCCTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacattc