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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgacctttgctactgaagcttctcacttgagctatattttggaccttgtcgaatttgattatcttatattttatcatgtatttgtgcttttccaactgtgtatagattggtctggtagtgttttaaggttcatgtgatttcctgctacagGATTTGCAACCAGACATGTCAGAGGCATTAGCCACTTTTGACGCTTATTTAGCTCTTGTCAGCCTTCTG

Basic information

species Physcomitrella patens
transcript PP1S101_18V6.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161414|gb|FC337620.1|FC337620
EST:     GAGGCATGGCTCTCAGCTGCTTCCTCGTGGGGTTTTCCTTCTACTTACGG                         GATTTGCAACCAGACATGTCAGAGGCATTAGCCACTTTTGACGCTTATTTA
genomic: GAGGCATGGCTCTCAGCTGCTTCCTCGTGGGGTTTTCCTTCTACTTACGGgttcgacctt ... cctgctacagGATTTGCAACCAGACATGTCAGAGGCATTAGCCACTTTTGACGCTTATTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtatagattggtctggtagtgttttaaggttcatgtgatttcctgctacagGATTTGCAACCAGACATGTCAGAGGCATTAGCCACTTTTGACGCTTATTTAGCTCTTGTCAGCCTTCTG
                                          tttcctgct  CT-rich tract
     tatagatt  TA-rich tract