1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtttcaaggtaatccatacattcctatcctgttggttatttgtaagctgctctttacttttcttttgctgttggagtcttatcctaccacgttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGCGGCTAATGTCATCAACCAACCAACCAAGCTTTTCTCAATACAACGAAA
species | Physcomitrella patens |
transcript | PP1S81_165V6.4 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA CGAGTGGTGGCGAAGTCGCGACACGTAAACATAGCTGATCGCATGTGGGCGEST: gi|37822648|gb|BJ580714.1|BJ580714
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGEST: gi|162199150|gb|FC374596.1|FC374596
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGEST: gi|37839286|gb|BJ597294.1|BJ597294
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGEST: gi|162256335|gb|FC432345.1|FC432345
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
EST: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCA CGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
genomic: GTTTCACTGTTGGACCTGTTAACGTCAGACATTGCTATATCCCAATACCAgtaagatctt ... gttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCG
gctgctctttacttttcttttgctgttggagtcttatcctaccacgttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGCGGCTAATGTCATCAACCAACCAACCAAGCTTTTCTCAATACAACGAAA
tttacttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcaaggtaatccatacattcctatcctgttggttatttgtaagctgctctttacttttcttttgctgttggagtcttatcctaccacgttttgacagCGAGTGGTGGCGAAGTCGCGACACGTAAACGTAGCTGATCGCATGTGGGCGCGGCTAATGTCATCAACCAACCAACCAAGCTTTTCTCAATACAACGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT