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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcacaatttgccactcgtaacatgcgagtctttcgagtgtagatttttccacccatgactaaaattgcacatcattgagtttctcattgtgtttgagcgcaatggtgattgcctcttctctgggtcagctgttttacgtctagtaaacctgagctgttgtggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGTTGGCCACACGGTTATTCCAAGCGCAGCATTTAGCTATCCTTGATCCGAA

Basic information

species Physcomitrella patens
transcript PP1S79_115V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842445|gb|BJ600453.1|BJ600453
EST:     TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGG                         GACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
genomic: TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGGgtaaggcaca ... ggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
EST: gi|37834302|gb|BJ592314.1|BJ592314
EST:     TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGG                         GACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
genomic: TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGGgtaaggcaca ... ggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
EST: gi|37850880|gb|BJ608888.1|BJ608888
EST:     TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGG                         GACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
genomic: TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGGgtaaggcaca ... ggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
EST: gi|18338496|gb|BJ170520.1|BJ170520
EST:     TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGG                         GACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
genomic: TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGGgtaaggcaca ... ggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT
EST: gi|18340950|gb|BJ172982.1|BJ172982
EST:     TCAGNTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGG                         GACTTGCATTCCCAGTGGTGATTNTAGCGCTTGTACCGATCCGAAACATGT
genomic: TCAGCTAGCTTGTCTTTGGGCACTGTGGAACCTAAAGGAGAGCAAATGGGgtaaggcaca ... ggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctgggtcagctgttttacgtctagtaaacctgagctgttgtggttacgcagGACTTGCATTCCCAGTGGTGATTCTAGCGCTTGTACCGATCCGAAACATGTTGGCCACACGGTTATTCCAAGCGCAGCATTTAGCTATCCTTGATCCGAA
              tgtttta  TA-rich tract