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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaagcataacgtgatatattgtcatttaaattgttgtttattcagtcgcatagtacaatgttagatgtaagacattaatatcgacttgaatgtgcccagGTTGGAAATATGGTATTTTGGTTCTTTTTCTGCATTGTGGGGCAACCCATGTGCTTGCTCTTGTACTACCACGATGTTGTCAACTTTTCCAGCAACTGA

Basic information

species Physcomitrella patens
transcript PP1S66_164V6.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S66_164V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 15
taaagcataacgtgatatattgtcatttaaattgttgtttatt-cagtcgcatagtacaatgttagatgtaagacattaatatcgact-tgaatgtgcccagGTTGGAAATATGGTATTTTGGTTCTTTTTCTGCATTGTGGGGCAACCCATGTGCTTGCTCTTGTACTACCACGATGTTGTCAACTTT-TCCAGCAACTGA
                     || |   | ||| |   | ||| || | | | |        ||  ||||||  || |  || |   | | |   |   |||||||| || ||| ||||||||||||||||||||||    ||||| || |||||| | ||| ||||||| || |||||  | |||    |  || |    |
---------------------gttagccacattttccatgattgcaattgaaaaacttctgttttaatgtaaatcagttctaactcgtgtcatctttaacagGTTGGCAACATGATATTTTGGTTCTTTTTCTGCATCTATGGGCAGCCAATGTGCCTTCTCCTGTACTATCATGATGTGATGAACAGGATTGAGAAGGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgcatagtacaatgttagatgtaagacattaatatcgacttgaatgtgcccagGTTGGAAATATGGTATTTTGGTTCTTTTTCTGCATTGTGGGGCAACCCATGTGCTTGCTCTTGTACTACCACGATGTTGTCAACTTTTCCAGCAACTGA
                            cattaat  putative branch site (score: 3)
                       taagacattaatat  TA-rich tract