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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattggttcgaggggtatattcacctttttaaaattttaactatctgcagtagtcaatactgaaatcttttgacgaggaatgtcttgtgcgattggcagGTCTCTGCCCAAGTGTTGGGATCTTTTGGATACAGTCCCCCTGAATTCAGCACATCTGGAATGTATGATGTGAAAAGCGACGTTTATAGCTTTGGTGTTG

Basic information

species Physcomitrella patens
transcript PP1S64_28V6.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151051|gb|FC326868.1|FC326868
EST:     TGTCGGATTGTGGTTTGGCTGCTTTTACCCCATCCAGTGCTGAACGGCAG                         GTCTCTGCCCAAGTGTTGGGATCTTTTGGATACAGTCCCCCTGAATTCAGC
genomic: TGTCGGATTGTGGTTTGGCTGCTTTTACCCCATCCAGTGCTGAACGGCAGgtctgcatct ... cgattggcagGTCTCTGCCCAAGTGTTGGGATCTTTTGGATACAGTCCCCCTGAATTCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcagtagtcaatactgaaatcttttgacgaggaatgtcttgtgcgattggcagGTCTCTGCCCAAGTGTTGGGATCTTTTGGATACAGTCCCCCTGAATTCAGCACATCTGGAATGTATGATGTGAAAAGCGACGTTTATAGCTTTGGTGTTG
                       ttttgac  putative branch site (score: 3)
                  aaatctttt  TA-rich tract