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gtaaaggacttatacgttcaattgtgcacgttccaaagagtgtttggttcaatgtcctaccgaggactgagtgtactgaattcattattaacttgcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTGGCGAAGGAGCTGCCAAGGCAAACCTCATAGCAAATTCTACACTTAAAA
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|67694852|gb|BJ955085.1|BJ955085
genomic: CACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|162232153|gb|FC407729.1|FC407729
genomic: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|37824470|gb|BJ582536.1|BJ582536
genomic: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|208358963|gb|DC950140.1|DC950140
genomic: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|162159330|gb|FC335144.1|FC335144
genomic: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTEST: gi|162254521|gb|FC430294.1|FC430294
genomic: TTAAGCCAGTTCTCACTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
EST: CTGATGCCCTGGTTGCACACTTACAGCCGATTCAG AAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
genomic: CTGATGCCCTGGTTGCACACTTACAGCCGATTCAGgtaaaggact ... gcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTT
caatgtcctaccgaggactgagtgtactgaattcattattaacttgcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTGGCGAAGGAGCTGCCAAGGCAAACCTCATAGCAAATTCTACACTTAAAA
tattaac putative branch site (score: 6)
aattcattattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggacttatacgttcaattgtgcacgttccaaagagtgtttggttcaatgtcctaccgaggactgagtgtactgaattcattattaacttgcacgtgcagAAAACTTACAGCGAAGTCATTGCGGATCAAAGTTATCTTGATAGTATTCTTGGCGAAGGAGCTGCCAAGGCAAACCTCATAGCAAATTCTACACTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC