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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttaattttatttttaaaacaatattattgttgttacatttcttttgcatgagaaatgttgtgcactagttgttacattaccatatgctatctcctttccaagaacctggtttatcaagctcatcgggtctcgtttgacagGTATTAGATGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACT

Basic information

species Physcomitrella patens
transcript PP1S54_271V6.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_271V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: AT5G63960.1 (Arabidopsis thaliana), 3'ss of exon 14
gtaagttttttaattttatttttaaaacaata--ttattgttgttacatttcttttgcatgagaaatgttgtgcactagttgttacattaccatatgctatctcctttccaagaacctggtttatcaagctcatcgggtctcgtttgacagGTATTAGATGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACT
                      |||     |   |||| | | | ||||||| |||   ||    ||    |||| || ||      || | | ||| |   |  |||          | | | |||| |      | | |       ||||| ||||| || | | |||| | |||||| ||||||||||| |||||||||||||| ||| ||||||| || || |||||||| || ||||| || ||||
---------------------gtaagtgggtgatttatggatctaacatttccttt---tggcctatcggttgcattaattccactgttccgacatgtttgttgttttg---------gatatgtcaaac------gatatt------cagGTTTTAGAAGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACT

upper sequence: PP1S54_271V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: EFJ15982 (Selaginella moellendorffii), 3'ss of exon 13
gtaagttttttaattttatttttaaaacaatattattgttgttacatttcttttgcatgagaaatgttgtgcactagttgttacattaccatatgctatctcctttccaagaacctggtttatcaagctcatcgggtctcgtttgacagGTATTAGATGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACT
                                                                                           || | ||  ||        ||| |   |||   || | |      |   |  | ||||||  |||| || |  || || |  || || ||||||||||||||  | |||||||||||| ||||||| || || |||||||| ||||||||||| || |
------------------------------------------------------------------------------------------gtaag-tagttcgggcttttgaatcgatttttataaacgc------tgctgcgttacagGTTCTAGAAGCAAGGGCTGGATTTTACGAAAAGCCAATTGCCACGCTTGATTTTGCATCACTGTACCCATCAATTATGATGGCTTACAATCTTTGCTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatctcctttccaagaacctggtttatcaagctcatcgggtctcgtttgacagGTATTAGATGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACT
                                          tctcgttt  CT-rich tract
                        tttatcaa  TA-rich tract