Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatacattacaattgcttcttgaagcacatctttagctacatcatgtacatctactctgtgttttagtggtatttatcctccctatgttctgcagaatcgtaagatcattgtaattgtttcaatttgagtacgtcatggattttccagGTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCTCCATGAATGGCACTGTGGGCCCTCCACAACCCATTATTGATGTGAGGCT

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100365584|gb|BY966669.1|BY966669
EST:     AGAGAAGTTTTTGCGGGTCATAATGTGTGCACCTGTCATGCAAGGATATG                         GTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCT
genomic: AGAGAAGTTTTTGCGGGTCATAATGTGTGCACCTGTCATGCAAGGATATGgtaagcatac ... gattttccagGTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCT
EST: gi|162167248|gb|FC342813.1|FC342813
EST:     AGAGAAGTTTTTGCGGGTCATAATGTGTGCACCTGTCATGCAAGGATATG                         GTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCT
genomic: AGAGAAGTTTTTGCGGGTCATAATGTGTGCACCTGTCATGCAAGGATATGgtaagcatac ... gattttccagGTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatcgtaagatcattgtaattgtttcaatttgagtacgtcatggattttccagGTTTGACTGAGACGTGTGCTGCAAGTTTCCTCCAAGTTCCGGATGTCATCTCCATGAATGGCACTGTGGGCCCTCCACAACCCATTATTGATGTGAGGCT
                                               ttttcc  CT-rich tract
                  taattgtttcaattt  TA-rich tract