1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttggtatttacttcagaatgttgtgttcttctctagttaataattatatgggaaagcaagttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTGTGAATTGGCTCATTTCGTATTCAAAGTACACCCAG
species | Physcomitrella patens |
transcript | PP1S44_102V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|22133115|gb|BQ827551.1|BQ827551
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37838710|gb|BJ596718.1|BJ596718
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: CTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|162276207|gb|FC452899.1|FC452899
genomic: CTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37845049|gb|BJ603057.1|BJ603057
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37838267|gb|BJ596275.1|BJ596275
genomic: GTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|22492681|gb|BU052604.1|BU052604
genomic: GTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|22492244|gb|BU052167.1|BU052167
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37852823|gb|BJ610831.1|BJ610831
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|162276206|gb|FC452898.1|FC452898
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: CAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37834888|gb|BJ592900.1|BJ592900
genomic: CAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: TGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37846602|gb|BJ604610.1|BJ604610
genomic: TGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: CCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTNGACAAGAAACTNGCACAACGTAAACATTTTCCAGCTEST: gi|37834988|gb|BJ593000.1|BJ593000
genomic: CCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: CTCAGACCCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|162239653|gb|FC418014.1|FC418014
genomic: CTCAGA-CCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: CAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|37850336|gb|BJ608344.1|BJ608344
genomic: CAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: TGGAGACTTCTCAGACCCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTEST: gi|162179502|gb|FC356542.1|FC356542
genomic: TGGAGACTTCTCAGA-CCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
EST: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAG GTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
genomic: GTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtattt ... ggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCT
agttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTGTGAATTGGCTCATTTCGTATTCAAAGTACACCCAG
gactaaa putative branch site (score: 2)
tttttaattatacttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtatttacttcagaatgttgtgttcttctctagttaataattatatgggaaagcaagttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcagGTGTTTTGGGGACTTGACAAGAAACTTGCACAACGTAAACATTTTCCAGCTGTGAATTGGCTCATTTCGTATTCAAAGTACACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG