1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaacgtatgcttgtatgtgtctactttccatgtgaattccgagttggcacatctttgtattgttatctaattctctttttatgatcgcaactgtctttcagGTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGGGTGCCTCTCTAGATACAAACTCTGGTCACTTAACACTCTGCCTTGTTTG
species | Physcomitrella patens |
transcript | PP1S42_132V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GACGACAAATATGTATTGGATGTGGTGAACAAATCGGGTCAGCAGCAAAG GTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGGEST: gi|37836752|gb|BJ594760.1|BJ594760
genomic: GACGACAAATATGTATTGGATGTGGTGAACAAATCGGGTCAGCAGCAAAGgtaacgtatg ... tgtctttcagGTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGG
EST: GACGACAAATATGTATTGGATGTGGTGAACAAATCGGGTCAGCAGCAAAG GTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGG
genomic: GACGACAAATATGTATTGGATGTGGTGAACAAATCGGGTCAGCAGCAAAGgtaacgtatg ... tgtctttcagGTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGG
gcacatctttgtattgttatctaattctctttttatgatcgcaactgtctttcagGTTTGCAGGAGATGTGGTACCTGCACTGCCTTTGGTAAGAAGAAGCGAGGGGTGCCTCTCTAGATACAAACTCTGGTCACTTAACACTCTGCCTTGTTTG
atctaat putative branch site (score: 20)
ctgtctttc putative PPT
tattgttatctaatt TA-rich tract