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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttcacttgacacctgcaatcttttgaacattttgaacgtcaaacgtaacatcttgtgaagttttgagtgaaaatcaatccagatttctgtacataaatatgatccacacttgtgctctaatcttccacttatatatatatatatatacatatactttgcctttataccagGTGCTGGAGTTCCTAACTTTCAAAGAGAAGCTAGAAAAGTCACATCAGCTCTTGGTTGCACGTATTGAGTCTATCATTCTGTCTTTGAAACGAAAGGCTC

Basic information

species Physcomitrella patens
transcript PP1S425_19V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162246154|gb|FC423590.1|FC423590
EST:     AAGCTGCAGATCTTGCAATTCTTGCGTATCACCATAACACCTACAGCAAA                         GTGCTGGAGTTCCTAACTTTCAAAGAGAAGCTAGAAAAGTCACATCAGCTC
genomic: AAGCTGCAGATCTTGCAATTCTTGCGTATCACCATAACACCTACAGCAAAgtgggtttca ... tttataccagGTGCTGGAGTTCCTAACTTTCAAAGAGAAGCTAGAAAAGTCACATCAGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaatcttccacttatatatatatatatatacatatactttgcctttataccagGTGCTGGAGTTCCTAACTTTCAAAGAGAAGCTAGAAAAGTCACATCAGCTCTTGGTTGCACGTATTGAGTCTATCATTCTGTCTTTGAAACGAAAGGCTC
 ctctaat  putative branch site (score: 3)
                                      ctttgccttt  putative PPT
             ttatatatatatatat  TA-rich tract