1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaacgctctagattccactctgcttattttgagtttttgataatcaagctactcatcgtatacgtcgatacatttttattttataacatttatatctgcttggatgtgtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGTATCTGTACAGCCAAGACAATCATGTTGTAGCCGGAGCTCTTCTTGCTG
species | Physcomitrella patens |
transcript | PP1S414_22V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162172804|gb|FC348393.1|FC348393
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162196104|gb|FC372743.1|FC372743
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162198496|gb|FC375331.1|FC375331
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162196706|gb|FC373826.1|FC373826
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162170115|gb|FC347027.1|FC347027
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162175301|gb|FC351499.1|FC351499
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTTAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGEST: gi|162275985|gb|FC452053.1|FC452053
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
EST: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTG GGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
genomic: GGCTATTCAAGAACAAGGAGCATGGAAAAGCCAGTGCTGCAGCAAGTTTGgtaacgctct ... gtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAG
cgtcgatacatttttattttataacatttatatctgcttggatgtgtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGTATCTGTACAGCCAAGACAATCATGTTGTAGCCGGAGCTCTTCTTGCTG
ttataac putative branch site (score: 10)
tcttatc putative PPT
atacatttttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgctctagattccactctgcttattttgagtttttgataatcaagctactcatcgtatacgtcgatacatttttattttataacatttatatctgcttggatgtgtcttatcagGGGCTTATAATGTTATGGGATGTTGATGGAGGTCTTCCATTAGTTGACAAGTATCTGTACAGCCAAGACAATCATGTTGTAGCCGGAGCTCTTCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT