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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttagctaattcctttacctgctgaccttggtttattttaatttactgtaatttttggtaatctaatattgcttttatttatgtttgcatggttcgttctttcaattctccttatttcgttttgaaattttggcagcttgaataaaattctgcaagtgtatttactcgttgctatttttctgaggggccgcagTGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGTCTGGGCTTGTTTCTCGTAATAATAAACTTGTCATTGATGCACAAAG

Basic information

species Physcomitrella patens
transcript PP1S3_184V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150049|gb|FC326580.1|FC326580
EST:     TGATGATCTTGAAAGTATTGATATTCGAACTCACATTCTCACTAAAGAAA                         TGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGT
genomic: TGATGATCTTGAAAGCATTGATATTCGAACTCACATTCTCACTAAAGAAAgtatgttagc ... ggggccgcagTGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGT
EST: gi|162227223|gb|FC403867.1|FC403867
EST:     TGATGATCTTGAAAGTATTGATATTCGAACTCACATTCTCACTAAAGAAA                         TGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGT
genomic: TGATGATCTTGAAAGCATTGATATTCGAACTCACATTCTCACTAAAGAAAgtatgttagc ... ggggccgcagTGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaataaaattctgcaagtgtatttactcgttgctatttttctgaggggccgcagTGTTGGAGAAGGTTGTGGGGTGGGGTATTAGTCACCACTTACAGAAGCAGTCTGGGCTTGTTTCTCGTAATAATAAACTTGTCATTGATGCACAAAG
                                  tatttttct  TA-rich tract