1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatttctttcgaactcaaagtagttggtgtagcattttgaatgaacctcagtggaattcaggattgtgcttcatgtgtttcttcttcatgggacgatttatcctgcttcatttttctgctttctaaagcttgttggtttgagggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAGTGAGTGCTTGATGTCTCGGCTCAGTCGTTCTTGTCGAAGATTATTTGA
species | Physcomitrella patens |
transcript | PP1S35_94V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|7286407|gb|AW598836.1|AW598836
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|67692532|gb|BJ952765.1|BJ952765
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162195482|gb|FC370899.1|FC370899
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162185502|gb|FC362571.1|FC362571
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATTTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162167618|gb|FC343750.1|FC343750
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|7584064|gb|AW699962.1|AW699962
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162170368|gb|FC346773.1|FC346773
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|67694918|gb|BJ955151.1|BJ955151
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|208380575|gb|DC919361.1|DC919361
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162166908|gb|FC343293.1|FC343293
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|162239088|gb|FC416227.1|FC416227
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|15728076|gb|BI740607.1|BI740607
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAEST: gi|7582998|gb|AW699162.1|AW699162
genomic: CCCATCCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
EST: CCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAG CTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
genomic: CCCACCTTATCTGAAGTTTTGGACGAGCTGTTCAAGGCAGCTAAGgtatttcttt ... gggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCA
tttatcctgcttcatttttctgctttctaaagcttgttggtttgagggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAGTGAGTGCTTGATGTCTCGGCTCAGTCGTTCTTGTCGAAGATTATTTGA
ttctaaa putative branch site (score: 11)
ttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctttcgaactcaaagtagttggtgtagcattttgaatgaacctcagtggaattcaggattgtgcttcatgtgtttcttcttcatgggacgatttatcctgcttcatttttctgctttctaaagcttgttggtttgagggttggcagCTTGACGAGGAGCATGCGGCAGTAGAAACCCCAAAGGAAGTACTTGAATCAGTGAGTGCTTGATGTCTCGGCTCAGTCGTTCTTGTCGAAGATTATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA