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gtaggtctgtcatcccttcttttttcacgagtttcctgttttccatgctaagctttgcaatattactgaatagttttcgttcaattttttgatggatttgcaactaatctcccacaaatttcggaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTGCCCTAGATCGTGGCCTGGTTGATACTCTTGGTGGAATCTCTAAAGCAG
species | Physcomitrella patens |
transcript | PP1S25_21V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162211075|gb|FC387099.1|FC387099
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162158570|gb|FC334573.1|FC334573
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162276212|gb|FC452904.1|FC452904
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162153221|gb|FC329003.1|FC329003
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162181979|gb|FC356850.1|FC356850
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162168390|gb|FC344704.1|FC344704
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162276525|gb|FC452905.1|FC452905
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162211074|gb|FC387098.1|FC387098
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162257210|gb|FC433086.1|FC433086
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTEST: gi|162151649|gb|FC327778.1|FC327778
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
EST: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG ATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
genomic: ATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCGgtaggtctgt ... gaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCT
gttcaattttttgatggatttgcaactaatctcccacaaatttcggaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTGCCCTAGATCGTGGCCTGGTTGATACTCTTGGTGGAATCTCTAAAGCAG
aactaat putative branch site (score: 16)
cttcc putative PPT
attttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtctgtcatcccttcttttttcacgagtttcctgttttccatgctaagctttgcaatattactgaatagttttcgttcaattttttgatggatttgcaactaatctcccacaaatttcggaacttccagATAGAGAAATTAGAAGAAGTTGCGCAAGGGCGTGTCTGGACTGGCAAAGCTGCCCTAGATCGTGGCCTGGTTGATACTCTTGGTGGAATCTCTAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA