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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctgagttgaaattaggatatctcaatctgcgactttaaagaagatgttcattttgtgatatgttttgtacgtatcgtgcctcaacgttgatgaactaacacagatgaatgcagGTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCC

Basic information

species Physcomitrella patens
transcript PP1S249_29V6.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S249_29V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: GLYMA20G16030.1 (Glycine max), 3'ss of exon 14
gtatgtttctgagttgaaatta------ggatatc-tcaatctgcgactttaaagaa-gatgttcattttgtgatatgttt-tgtacgtatcgtgcctcaacgttgatga-actaacacagatgaatgcagGTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCC---------------------
||| |||  ||| |  |||          |||| | |  |||| |   | |        |  ||   ||  ||  || |   | ||  | | ||   |||  || | ||| | | | |  | |||   |||||||||||||||||||| ||  ||||||||||||||||                      
gtaagttcttgaatccaaaccttcaaatagataccatgtatctactgttgtggtctgtaacatttgcttgttgccatttccatttaacttttgtagttcatagtgggtgacattgatattg-tga---cagGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGAT

upper sequence: PP1S249_29V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: GLYMA13G10730.1 (Glycine max), 3'ss of exon 16
gtatgtttctgagttgaaat-----------taggatatctcaatctgcgactttaaagaaga-tgttcattttg--tgatatgttttgtacgtatcgtgcctcaacgttgatgaactaacacagatg--aatgcagGTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCC---------------------
||| |||  ||| |  |||            ||  || | |  |  | |     |   | ||  |||||  ||||  || |    |||  |  || | |   |      |  ||   | |||  |||   |   |||||||||||||||||||| ||  ||||||||||||||||                      
gtaagttcttgaatccaaaccttcagatagataccatgtatatactttctttcctgttgtagtctgttccatttgcttgttgccatttccatttaacttttgtagttcatagtggg-tgacattgatattatgacagGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttttgtacgtatcgtgcctcaacgttgatgaactaacacagatgaatgcagGTTTGGATAAATTTGGGCCCCTTACTTTATCACTTTGCC
                                  aactaac  putative branch site (score: 1)