1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctgtcttcgtgtttttgaactatgtttaagaggtcatgtgctatctgaggttaattctttattatattgtacaggctaacaattgttctgttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGATATTCAGGGCCTGCTGCCGTTGTTCTGGTCAGTTTGCCCCCACCTCCTC
species | Physcomitrella patens |
transcript | PP1S22_329V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGAEST: gi|162258025|gb|FC434119.1|FC434119
genomic: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
EST: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGAEST: gi|162241999|gb|FC414445.1|FC414445
genomic: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
EST: GCAGCAACAACCCCTCTGAATCGGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGAEST: gi|162190991|gb|FC368397.1|FC368397
genomic: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
EST: GCAGCAACAACCCCTCTGAATCGGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGAEST: gi|162242000|gb|FC414446.1|FC414446
genomic: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
EST: GCAGCAACAACCCCTCTGAATCGGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGAEST: gi|162183793|gb|FC360710.1|FC360710
genomic: GCAGCAACAACCCCTCTGAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
EST: GAATCGGCCGTACCCGCGGTAGATGAACAGCAG GTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
genomic: GAATCTGCCGTACCCGCGGTAGATGAACAGCAGgtgaaattga ... ttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGA
tgaggttaattctttattatattgtacaggctaacaattgttctgttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGATATTCAGGGCCTGCTGCCGTTGTTCTGGTCAGTTTGCCCCCACCTCCTC
ggctaac putative branch site (score: 7)
ttctgtttt putative PPT
ttaattctttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcttcgtgtttttgaactatgtttaagaggtcatgtgctatctgaggttaattctttattatattgtacaggctaacaattgttctgttttgaacagGTCAATAAATTTTTGTACACGTGCTTGAAACTGAACTCCATTATCATGCGATATTCAGGGCCTGCTGCCGTTGTTCTGGTCAGTTTGCCCCCACCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC