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...ttttacttttaatgcgcgaatcatacacttacatttttgttcattttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
species | Physcomitrella patens |
transcript | PP1S222_130V6.3 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162211596|gb|FC387676.1|FC387676
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162191926|gb|FC366931.1|FC366931
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|15730173|gb|BI741714.1|BI741714
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GCTGCATGGGAGATATTTACACCATTGTTGCATCGGATTGATGCTGGAAAAEST: gi|67694438|gb|BJ954671.1|BJ954671
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TNTTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162280090|gb|FC456484.1|FC456484
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162243422|gb|FC425118.1|FC425118
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: GGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162208214|gb|FC384318.1|FC384318
genomic: GGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAAEST: gi|162243423|gb|FC425119.1|FC425119
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: GGGATGAATTGCGG GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: GGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
ttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
gactaat putative branch site (score: 2)
tctctgctc putative PPT
taaatttgactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttacttttaatgcgcgaatcatacacttacatttttgttcattttagcagatcatgtaggagtctaaatttgactaatttatccacgtctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAACTTAAAGTGATACCTTACAAGGAAGGTTCTCGAGGACCAGCTGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG