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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttctgccctcctgtctcattcatttcaagatggctatattcaatcatgtgtgcaattctgttgctttttcgttgcttgtgcctcgatagaaaccagaaacatgtttggttaaaatattgatctagacaattcgtacttgggcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7067204|gb|AW497059.1|AW497059
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162220369|gb|FC395737.1|FC395737
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162153066|gb|FC330096.1|FC330096
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCANGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162208214|gb|FC384318.1|FC384318
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|15730173|gb|BI741714.1|BI741714
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162211596|gb|FC387676.1|FC387676
EST:     AGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: AGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|18339482|gb|BJ171509.1|BJ171509
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|37823531|gb|BJ581597.1|BJ581597
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|67698044|gb|BJ958277.1|BJ958277
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162153065|gb|FC330095.1|FC330095
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162259274|gb|FC435671.1|FC435671
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|37827352|gb|BJ585364.1|BJ585364
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|37844665|gb|BJ602673.1|BJ602673
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162259275|gb|FC435672.1|FC435672
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|37829780|gb|BJ587792.1|BJ587792
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|37851060|gb|BJ609068.1|BJ609068
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|67694438|gb|BJ954671.1|BJ954671
EST:     TATCAAGATATTGTTANTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TNTTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
EST: gi|67578605|gb|BJ950772.1|BJ950772
EST:     TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
genomic: TATCAAGATATTGTTATTCCTGAGGCTTATGAGCGCCTGCTTCTTGATACgtaaattctt ... gcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacatgtttggttaaaatattgatctagacaattcgtacttgggcttgtgcagTATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG
                   tattgat  putative branch site (score: 3)
             ttaaaatattgatcta  TA-rich tract