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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaacaacaaatcttgcctcgcttttgagaatctagtttcttccagtaatttctccgaatttcattatgcgaacctagtttccattagaagatcaaatgagcgaaaaacctagggtgtgacatctggtcttgtcatgattggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG

Basic information

species Physcomitrella patens
transcript PP1S208_168V6.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37845237|gb|BJ603245.1|BJ603245
EST:     GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGG                         TTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
genomic: GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGGgtgggtaaca ... tggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
EST: gi|37852404|gb|BJ610412.1|BJ610412
EST:     GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGG                         TTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
genomic: GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGGgtgggtaaca ... tggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
EST: gi|37846810|gb|BJ604818.1|BJ604818
EST:     GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGG                         TTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
genomic: GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGGgtgggtaaca ... tggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
EST: gi|208379263|gb|DC918949.1|DC918949
EST:     GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGG                         TTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
genomic: GCCCTCTCGGCGGGAGGCAGTTGCCGACTCTTTAAATCAAGCTATCTTGGgtgggtaaca ... tggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgagcgaaaaacctagggtgtgacatctggtcttgtcatgattggttggcagTTGCTCAGGGCAAGCCTGCATTGCCTGCACTTGAG
         aaaaa  TA-rich tract